fix lint

.lintr

@@ -1,4 +1,4 @@
-exclusions: list('inst/doc/osem-intro.R')
+exclusions: list.files(path = 'inst/doc', full.names = T)
 linters: with_defaults(
     # we use snake case
     camel_case_linter = NULL,

R/archive.R

@@ -9,18 +9,18 @@ osem_archive_endpoint = function () {
 }
 
 #' Fetch day-wise measurements for a single box from the openSenseMap archive.
-#' 
+#'
 #' This function is significantly faster than \code{\link{osem_measurements}} for large
 #' time-frames, as daily CSV dumps for each sensor from
 #' \href{http://archive.opensensemap.org}{archive.opensensemap.org} are used.
 #' Note that the latest data available is from the previous day.
-#' 
+#'
 #' By default, data for all sensors of a box is fetched, but you can select a
 #' subset with a \code{\link[dplyr]{dplyr}}-style NSE filter expression.
-#' 
+#'
 #' The function will warn when no data is available in the selected period,
 #' but continue the remaining download.
-#' 
+#'
 #' @param x A `sensebox data.frame` of a single box, as retrieved via \code{\link{osem_box}},
 #'   to download measurements for.
 #' @param fromDate Start date for measurement download.
@@ -28,11 +28,11 @@ osem_archive_endpoint = function () {
 #' @param sensorFilter A NSE formula matching to \code{x$sensors}, selecting a subset of sensors.
 #' @param progress Whether to print download progress information, defaults to \code{TRUE}.
 #' @return A \code{tbl_df} Containing observations of all selected sensors for each time stamp.
-#' 
+#'
 #' @seealso \href{https://archive.opensensemap.org}{openSenseMap archive}
 #' @seealso \code{\link{osem_measurements}}
 #' @seealso \code{\link{osem_box}}
-#' 
+#'
 #' @export
 osem_measurements_archive = function (x, ...) UseMethod('osem_measurements_archive')
 
@@ -47,11 +47,11 @@ osem_measurements_archive.default = function (x, ...) {
 #' @describeIn osem_measurements_archive Get daywise measurements for one or
 #' more sensors of a single box
 #' @export
-#' @examples 
+#' @examples
 #' # fetch measurements for a single day
 #' box = osem_box('593bcd656ccf3b0011791f5a')
 #' m = osem_measurements_archive(box, as.POSIXlt('2018-09-13'))
-#'   
+#'
 #' \donttest{
 #'   # fetch measurements for a date range and selected sensors
 #'   sensors = ~ phenomenon %in% c('Temperatur', 'Beleuchtungsstärke')
@@ -60,11 +60,11 @@ osem_measurements_archive.default = function (x, ...) {
 osem_measurements_archive.sensebox = function (x, fromDate, toDate = fromDate, sensorFilter = ~ T, progress = T) {
   if (nrow(x) != 1)
     stop('this function only works for exactly one senseBox!')
-  
+
   # filter sensors using NSE, for example: `~ phenomenon == 'Temperatur'`
   sensors = x$sensors[[1]] %>%
     dplyr::filter(lazyeval::f_eval(sensorFilter, .))
-  
+
   # fetch each sensor separately
   dfs = by(sensors, 1:nrow(sensors), function (sensor) {
     df = archive_fetch_measurements(x, sensor$id, fromDate, toDate, progress) %>%
@@ -72,7 +72,7 @@ osem_measurements_archive.sensebox = function (x, fromDate, toDate = fromDate, s
       #dplyr::mutate(unit = sensor$unit, sensor = sensor$sensor) %>% # inject sensor metadata
       dplyr::rename_at(., 'value', function(v) sensor$phenomenon)
   })
-  
+
   # merge all data.frames by timestamp
   dfs %>% purrr::reduce(dplyr::full_join, 'createdAt')
 }
@@ -85,25 +85,25 @@ archive_fetch_measurements = function (box, sensor, fromDate, toDate, progress)
     dates = append(dates, list(from))
     from = from + as.difftime(1, units = 'days')
   }
-  
+
-  http_handle = httr::handle(osem_archive_endpoint()) # reuse the http connection for speed! 
+  http_handle = httr::handle(osem_archive_endpoint()) # reuse the http connection for speed!
   progress = if (progress && !is_non_interactive()) httr::progress() else NULL
-  
+
   measurements = lapply(dates, function(date) {
     url =  build_archive_url(date, box, sensor)
     res = httr::GET(url, progress, handle = http_handle)
-  
+
     if (httr::http_error(res)) {
       warning(paste(
         httr::status_code(res),
         'on day', format.Date(date, '%F'),
         'for sensor', sensor
       ))
-      
+
       if (httr::status_code(res) == 404)
         return(data.frame(createdAt = character(), value = character()))
     }
- 
+
     measurements = httr::content(res, type = 'text', encoding = 'UTF-8') %>%
       parse_measurement_csv
   })
@@ -117,7 +117,7 @@ build_archive_url = function (date, box, sensor) {
   sensorId = sensor
   d =  format.Date(date, '%F')
   format = 'csv'
-  
+
   paste(
     osem_archive_endpoint(),
     d,
@@ -131,5 +131,5 @@ build_archive_url = function (date, box, sensor) {
 #' https://github.com/sensebox/osem-archiver/blob/612e14b/helpers.sh#L66
 osem_box_to_archivename = function (box) {
   name = gsub('[^A-Za-z0-9._-]', '_', box$name)
-  paste(box$X_id, name, sep='-')
+  paste(box$X_id, name, sep = '-')
 }

R/external_generics.R

@@ -96,17 +96,17 @@ register_s3_method <- function(pkg, generic, class, fun = NULL) {
   stopifnot(is.character(pkg), length(pkg) == 1)
   stopifnot(is.character(generic), length(generic) == 1)
   stopifnot(is.character(class), length(class) == 1)
-  
+
   if (is.null(fun)) {
     fun <- get(paste0(generic, ".", class), envir = parent.frame())
   } else {
     stopifnot(is.function(fun))
   }
-  
+
   if (pkg %in% loadedNamespaces()) {
     registerS3method(generic, class, fun, envir = asNamespace(pkg))
   }
-  
+
   # Always register hook in case package is later unloaded & reloaded
   setHook(
     packageEvent(pkg, "onLoad"),

tests/testthat/test_boxes.R

@@ -20,7 +20,7 @@ test_that('both from and to are required when requesting boxes, error otherwise'
 test_that('a list of boxes with phenomenon filter returns only the requested phenomenon', {
   check_api()
 
-  boxes = osem_boxes(phenomenon = 'Temperatur', date=Sys.time())
+  boxes = osem_boxes(phenomenon = 'Temperatur', date = Sys.time())
   expect_true(all(grep('Temperatur', boxes$phenomena)))
 })